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April 2011 Microbe Feature article--BioCyc: Microbial Genomes and Cellular Networks

BioCyc: Microbial Genomes and Cellular Networks

by Peter D. Karp, Ingrid M. Keseler, Tomer Altman, Ron Caspi, Carol A. Fulcher, Pallavi Subhraveti, Anamika Kothari, Markus
Krummenacker, Mario Latendresse, Tom Lee, Suzanne M. Paley, Alexander G. Shearer, and Miles Trupp

The BioCyc system h... Read More

The D225G change in 2009 H1N1 influenza virus

Last year a mutation in the HA gene of the 2009 H1N1 influenza virus was identified in isolates from patients with severe disease. At the time I concluded that the emergence of this change was not a concern. Recently the Norwegian Institute of Public Health reported that the mutation, which caus... Read More

BacterioFiles Micro Edition 17 - Radical Radiation Resistance

This episode: Using bacteria to recover precious metals like palladium!




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BacterioFiles 170 - Good Copper, Bad Copper

This episode: With guest host Susan Gardner! We discuss nitrogen-fixing plant-friendly bacteria that help plants grow in copper-contaminated soil, helping to clean it up!


(19.1 MB, 20.9 minutes)


Show notes: 
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TWiV 275: Virocentricity with Eugene Koonin



 Hosts: Vincent Racaniello and Rich Condit Read More

TWiV 239: Filterable camels



Hosts: Vincent Racaniello, Alan Dove, ... Read More

Cell Organization and Cell Motility (Part 1) by Julie Theriot

This lecture covers the biochemical basis of actin-based motility (focusing on the pathogen Listeria as a model system for this process), the biophysical mechanism of polymerization-based force generation, and an evolutionary perspective of cell shape in prokaryotes and eukaryotes. The first par... Read More

TWiV 246: Pandora, pandemics, and privacy



Hosts: Vincent Racaniello, Alan Dove, ... Read More

Myra McClure on XMRV

Myra McClure, Professor in the Division of Infection and Immunity, University College of London, U.K., has focused on retroviruses for much of her research career. I discussed the potential role of the retrovirus XMRV in prostate cancer and chronic fatigue syndrome with Dr. McClure during ICAAC ... Read More

Mundo de los Microbios - Episodio 109 - Matthew Verbyla

Tratamiento de aguas residuales para reuso: ¿una idea novedosa o una útil vieja idea? En este episodio entrevistamos a Matthew Verbyla, un Ingeniero Sanitario y estudiante doctoral en la Universidad del Sur de la Florida.


... Read More

New Coronavirus Related to Viruses From Bats

The virus that is causing alarm among global public health authorities after it killed a man in Jeddah, Saudi Arabia earlier this year and is now linked to two other cases of disease is a novel type of coronavirus most closely related to viruses found in bats, according to a genetic analysis to ... Read More

TWiP 71: Happy trails to you



Hosts: Vincent Racaniello and Dickson Despommier Read More

BacterioFiles Micro Edition 38 - Competitor Curbs Cavities

This episode: Bacteria may help prevent cavities!




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TWiP 53 Letters

John writes:


Dear Vincent and Dickson,


I just heard your most recent TWIP. Please keep these podcasts going! I love listening to your podcasts and hearing your enthusiasm for my favorite biological topic, parasites. Remember that for every fan... Read More

Outbreak of Salmonella Infection (1954)

A film commissioned by the U.S. Air Force that shows a demonstration of what happens during the course of a Salmonella outbreak. The video examines source and means of contamination, factors aiding the survival and transfer of the organism, conditions of environment and general food handling pra... Read More

TWiV 223: EEEV and the serpent



Hosts: Vincent Racaniello, Read More

The Ghost Map - Author Steven Johnson on the 1854 Cholera Outbreak in London

Author Steven Johnson discusses The Ghost Map, his book about a cholera outbreak in 1854 London and the impact it had on science, cities and modern society. Read More

TWiM #78: A bacterium grows in Brooklyn

Hosts: Vincent RacanielloElio Schaechter, and Michael Schmidt.


Vincent, ... Read More

TWiM 54 Letters

Jacob writes:


Hi all,

Saw this media release from the Australian Institute of Marine Science about researchers isolating a combination of probiotic bacteria to assist in the prevention of Vibrio infections of spiny lobsters in aquaculture and thought of TW... Read More

Complex Microbial Community Structure in Adult Cystic Fibrosis Airways as Revealed by 16S rRNA PhyloChip

This poster, presented at the 109th ASM general meeting demonstrates the relationship between clinical measures of cystic fibrosis, a common and serious genetic disease, with the microbial ecology of bacteria that colonise the airways of these patients. The technique used to characterise the mi... Read More

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