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This simulation shows a dynamic molecular model of the bacterial cytoplasm

This simulation shows a dynamic molecular model of the bacterial cytoplasm, giving us a spectacular glimpse of the crowded conditions of the interior of a cell over a brief 15-microsecond time span. The model includes 50 of the most abundant types of macromolecules reported in Escherichia coli, for a total concentration of 275g/L. This "steric energy" simulation shows a model of macromolecular diffusion based on Brownian dynamics and steric interactions between the molecules. This can be compared the the "full energy" model that also includes electrostatic and hydrophobic interactions.

Click "source" to view video simulation.
 
 

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